Learn R Programming

⚠️There's a newer version (3.1-47) of this package.Take me there.

HH (version 3.1-30)

Statistical Analysis and Data Display: Heiberger and Holland

Description

Support software for Statistical Analysis and Data Display (Second Edition, Springer, ISBN 978-1-4939-2121-8, 2015) and (First Edition, Springer, ISBN 0-387-40270-5, 2004) by Richard M. Heiberger and Burt Holland. This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The second edition includes redesigned graphics and additional chapters. The authors emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises. All functions introduced in the book are in the package. R code for all examples, both graphs and tables, in the book is included in the scripts directory of the package.

Copy Link

Version

Install

install.packages('HH')

Monthly Downloads

6,252

Version

3.1-30

License

GPL (>= 2)

Maintainer

Richard Heiberger

Last Published

April 6th, 2016

Functions in HH (3.1-30)

ancova

Compute and plot oneway analysis of covariance
AEdotplot

AE (Adverse Events) dotplot of incidence and relative risk
NormalAndTplot

Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals.
OneWayVarPlot

Displays a three-panel bwplot of the data by group, of the group means, and of the entire dataset. This is an approximate visualization of the Mean Square lines from the ANOVA table for a one-way ANOVA model.
ResizeEtc

Display multiple independent trellis objects on the same coordinated scale.
pdiscunif

Discrete Uniform Distribution
intxplot

Interaction plot, with an option to print standard error bars.
dchisq.intermediate

Intermediate f and chisq functions to simplify writing for both R and S-Plus.
ae.dotplot

AE (Adverse Events) dotplot of incidence and relative risk
likertMosaic

Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids based on mosaic as the plotting style.
HHscriptnames

Find absolute pathname of a script file for the HH book in the HH package.
diag.maybe.null

Returns a value for the diagonal of NA and NULL arguments.
Discrete4

Discrete with four levels color dataset.
lmplot

Four types of residual plots for linear models.
GSremove

Remove selected GraphSheetPages in the S-Plus Windows GUI Graphsheet
gof.calculation

Calculate Box--Ljung Goodness of Fit for ARIMA models in S-Plus.
as.multicomp

Support functions in R for MMC (mean--mean multiple comparisons) plots.
AEdotplot.data.frame

AE (Adverse Events) dotplot of incidence and relative risk, support functions
X.residuals

Residuals from the regression of each column of a data.frame against all the other columns.
col3x2

col3x2 color dataset
panel.axis.right

Right-justify right-axis tick labels.
OddsRatio

Calculate or plot the odds ratio for a 2x2 table of counts.
F.curve

plot a chisquare or a F-curve.
print.latticeresids

Print a latticeresids object.
HH.regsubsets

Display tabular results for Best Subsets Regression.
lmatRows

Find the row numbers in the lmat corresponding to the focus factor.
if.R

Conditional Execution for R or S-Plus
cplx

Generate a sequence spanning the xlim of a lattice window.
norm.curve

plot a normal or a t-curve with both x and z axes.
mmcPruneIsomeans

MMC plots in lattice---suppress isomeans grid lines for specified levels of the factor.
defunct

Defunct Functions in Package 'HH'
hovBF

Homogeneity of Variance: Brown--Forsyth method
axis.i2wt

specialized axis function for interaction2wt.
mmcisomeans

Functions used by mmcplot.
panel.dotplot.tb

Dotplot with evenly spaced tiebreakers.
mmcplot

MMC (Mean-mean Multiple Comparisons) plots in lattice.
partial.corr

partial correlations
normalApproxBinomial

Plots to illustrate Normal Approximation to the Binomial---hypothesis tests or confidence intervals.
perspPlane

Helper functions for regr2.plot
NormalAndTPower

Construct a power graph based on the NTplot.
ancova-class

Class "ancova" Analysis of Covariance
panel.xysplom

panel method for xysplom.
diagQQ

QQ plot of regression residuals.
anova.ancovaplot

ANOVA table for a c("ancovaplot","trellis") object.
likertColor

Selection of colors for Likert plots.
LikertPercentCountColumns

Display likert plots with percents in the first column of panels and counts in the second column of panels.
interaction.positioned

interaction method for positioned factors.
bivariateNormal

Plot the bivariate normal density using wireframe for specified rho.
mmc

MMC (Mean--mean Multiple Comparisons) plots.
logit

Logistic and odds functions and their inverses.
hhpdf

R tools for writing HH2: hhpdf, hhdev.off, hhcapture, hhcode, hhpng, hhlatex
ResizeEtc.likertPlot

Display multiple independent trellis objects, representing likert plots, on the same coordinated scale.
strip.background0

Turn off the coloring in the trellis strip labels. Color 0 is the background color.
pyramidLikert

Print a Likert plot as a Population Triangle
panel.isomeans

isomeans grid for MMC plots.
NTplot

Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals, including normal approximation to the binomial.
extra

Miscellaneous functions that I wish were in or consistent between S-Plus and R.
lm.case

case statistics for regression analysis
multicomp.reverse

Force all comparisons in a "multicomp" object to have the same sign.
sufficient

Calculates the mean, standard deviation, and number of observations in each group of a data.frame that has one continuous variable and two factors.
regr1.plot

plot x and y, with optional straight line fit and display of squared residuals
as.matrix.listOfNamedMatrices

Convert a list of matrices to a single matrix
residual.plots.lattice

Construct four sets of regression plots: Y against X, residuals against X, partial residuals against X, partial residuals against each X adjusted for all the other X columns.
plot.hov

Homogeneity of Variance Plot
xysplom

scatterplot matrix with potentially different sets of variables on the rows and columns.
likert

Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids.
ci.plot

Plot confidence and prediction intervals for simple linear regression
col.hh

Initializing Trellis Displays
glhtWithMCP.993

Retain averaging behavior that was previously available in glht.
arma.loop

Loop through a series of ARIMA models and display coordinated tables and diagnoastic graphs.
npar.arma

Count the number of parameters in an ARIMA model specification.
print.NormalAndTplot

Print method for Normal and t plots from NTplot.
as.vector.trellis

Convert a two-dimensional trellis object into a one-dimensional trellis object. Change the order of panels in a trellis object.
panel.bwplot.superpose

Panel function for bwplot that displays an entire box in the colors coded by groups.
arima.diag.hh

Repair design error in S-Plus arima.diag
as.likert

Support functions for diverging stacked barcharts for Likert, semantic differential, and rating scale data.
mmc.mean

MMC (Mean--mean Multiple Comparisons) plots from the sufficient statistics for a one-way design.
grid.yaxis.hh

make x- and y-axis labels
diagplot5new

Transpose of ECDF for centered fitted values and residuals from a linear model.
resid.squares

plot squared residuals in inches to match the y-dimension
vif

Calculate the Variance Inflation Factor
print.TwoTrellisColumns

Print two conformable trellis plots in adjacent columns with user control of widths.
cp.calc

Rearranges and improves the legibility of the output from the stepwise function in S-Plus.
seqplot

Time series plot.
panel.confintMMC

Confidence interval panel for MMC tiebreaker plots, or confidence interval plot.
aovSufficient

Analysis of variance from sufficient statistics for groups.
combineLimits.trellisvector

Combine limits on a one-dimensional trellis object.
push.vp.hh

push and pop a grid viewport, turn clipping off, change scale.
panel.interaction2wt

Plot all main effects and twoway interactions in a multifactor design
plot.multicomp

Multiple comparisons plot that gives independent user control over the appearance of the significant and not significant comparisons.
mcalinfct

MCA multiple comparisons analysis (pairwise)
tsdiagplot

Times series diagnostic plots for a structured set of ARIMA models.
do.formula.trellis.xysplom

Interprets model formulas for xysplom and extended bwplots
lm.regsubsets

Evaluate lm model with highest adjusted $R^2$.
emptyMainLeftAxisLeftStripBottomLegend

Remove main title, left axis tick labels, left strip, bottom legend from plot and keep the vertical spacing allocated to those items.
matrix.trellis

Convert a one-dimensional trellis object to a two-dimensional trellis object. This permits combineLimits and useOuterStrips to work.
mmcAspect

Control aspect ratio in MMC plots to maintain isomeans grid as a square.
anovaMean

ANOVA table from the group sample sizes, means, and standard deviations.
residual.plots

Residual plots for a linear model.
ladder

Draw a "ladder of powers" plot, plotting each of several powers of y against the same powers of x.
datasets

Datasets for Statistical Analysis and Data Display, Heiberger and Holland
panel.likert

Panel functions for likert that include a stackWidth argument
hov

Homogeneity of Variance
plot.mmc.multicomp

MMC (Mean--mean Multiple Comparisons) plot.
position

Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined.
regr2.plot

3D plot of z against x and y, with regression plane fit and display of squared residuals.
lmatPairwise

lmatPairwise
tsacfplots

Coordinated time series and ACF and PCF plots.
ancovaplot

Analysis of Covariance Plots
multicomp.order

Update a multicomp object by ordering its contrasts.
strip.xysplom

strip function that is able to place the correlation or regression coefficient into the strip label.
print.tsdiagplot

Print a "tsdiagplot" object.
export.eps

Exports a graph to an EPS file.
panel.bwplott

Extension to S-Plus trellis to allow transposed plots.
legendGrob2wt

place separate keys to the left of each row of a trellis
panel.bwplot.intermediate.hh

Panel functions for bwplot.
panel.acf

Panel functions for tsdiagplot.
summary.arma.loop

summary and print and subscript methods for tsdiagplot and related objects.
panel.cartesian

trellis panel function, with labeled rows and columns and without strip labels.
interaction2wt

Plot all main effects and twoway interactions in a multifactor design
panel.pairs.hh

Function based on S-Plus panel.pairs to add the subpanel.scales and panel.cex arguments.
objip

loop through all attached directories looking for pattern, possibly restricting to specified class or mode.
interval

Prediction and Confidence Intervals for glm Objects
hh

Resolve filenames relative to the HH directory.
HH-package

Support software for Statistical Analysis and Data Display by Richard M. Heiberger and Burt Holland
latticeresids

Subroutine used by residual.plots.lattice
positioned-class

Class "positioned", extends "ordered" to specify the position for graphing the levels of a factor.
orthog.complete

Construct an orthogonal matrix which is an arbitrary completion of the column space of the input set of columns.
panel.ci.plot

Default Panel Function for ci.plot
useOuterStripsT2L1

Three-factor generalization of latticeExtra::useOuterStrips
regrresidplot

Draw a plot of y vs x from a linear model object, with residuals indicated by lines or squares.
rbind.trellis

Extend matrix reshaping functions to trellis objects.
residVSfitted

Draw plots of resid ~ y.hat and sqrt(abs(resid)) ~ y.hat
seqplot.forecast

seqplot with confidence bands for the forecast region.