compute.affinities(cdfname,verbose=TRUE)
compute.affinities2(cdfname,verbose=TRUE)
check.probes(probepackage,cdfname)
character
representing the name of
CDF
file associated with the arrays in the AffyBatch
.character
representing the name of the
package with the probe sequence information.TRUE
messages about the progress of
the function is printed.AffyBatch
with the
affinities for PM probes in the pm locations and the affinities for MM
probes in the mm locations. NA will be added for probes with no
sequence information.
Use compute.affinities2
if there are no MM probes.
check.probes
makes sure things are matching as they should.
gcrma,affinity.spline.coefs