Usage
corMartins(value=numeric(0), phy, form=~1, fixed = FALSE)
## S3 method for class 'corMartins':
coef(object, unconstrained = TRUE, ...)
## S3 method for class 'corMartins':
corMatrix(object,
covariate = getCovariate(object), corr = TRUE, ...)
Arguments
value
The $\alpha$ parameter
phy
An object of class phylo
representing the phylogeny
(with branch lengths) to consider
object
An (initialized) object of class corMartins
corr
a logical value. If 'TRUE' the function returns the correlation matrix, otherwise it returns
the variance/covariance matrix.
fixed
an optional logical value indicating whether the coefficients should be allowed
to vary in the optimization, ok kept fixed at their initial value. Defaults to 'FALSE', in
which case the coefficients are allowed to vary.
covariate
ignored for now.
unconstrained
a logical value. If 'TRUE' the coefficients are returned
in unconstrained form (the same used in the optimization
algorithm). If 'FALSE' the coefficients are returned in
"natural", possibly constrained, form. Defaults to 'TRUE'
...
some methods for these generics require additional arguments.
None are used in these methods.