createCNSummary

 SNPSetIllumina object after segmentation <code><a rd-options="" href="/link/segmentate?package=beadarraySNP&version=1.38.0" data-mini-rdoc="beadarraySNP::segmentate">segmentate</a></code> 

object

 SampleName or index of the sample for which to create the summary

sample

dnaIndex

 factor or column name in <code>featureData</code> slot 

subsample


  Create a summary object of the genomic copy number states in a sample of segmented data


manip

Importing data from Illumina SNP experiments and
performing copy number calculations and reports.

Jan Oosting

beadarraySNP

Normalization and reporting of Illumina SNP bead arrays

createCNSummary function

SNPSetIllumina object after segmentation <code><a href="segmentate" rd-options="">segmentate</a></code>

SampleName or index of the sample for which to create the summary

factor or column name in <code>featureData</code> slot

Create a summary object of the genomic copy number states in a sample of segmented data

Summarization of Copy number states

Total expected copynumber for a 'normal' specimen ~ 2*featurecount

CN.total.nrm

data.frame with columns <code>opa, count ,intensity, copynumber</code>

createCNSummary: Summarization of Copy number states

Description

Usage

Arguments

Value

Details

See Also