data(tamoxifen_counts)
tamoxifen <- dba.contrast(tamoxifen, categories=DBA_CONDITION)
tamoxifen
# Another way to do the same thing
tamoxifen$contrasts=NULL
tamoxifen <- dba.contrast(tamoxifen, tamoxifen$masks$Responsive, tamoxifen$masks$Resistant,
"Responsive", "Resistant")
tamoxifen
# Add add default contrasts
tamoxifen$contrasts=NULL
tamoxifen <- dba.contrast(tamoxifen)
tamoxifen
# Specify a blocking factor
tamoxifen$contrasts=NULL
tamoxifen <- dba.contrast(tamoxifen, categories=DBA_CONDITION, block=DBA_TISSUE)
tamoxifen
tamoxifen$contrasts=NULL
tamoxifen <- dba.contrast(tamoxifen, categories=DBA_CONDITION, block=list(c(3,4,5,8,9),c(1,2,10,11)))
tamoxifen
tamoxifen$contrasts=NULL
tamoxifen <- dba.contrast(tamoxifen, categories=DBA_CONDITION, block=tamoxifen$masks$MCF7)
tamoxifen <- dba.analyze(tamoxifen)
tamoxifen
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