debris_nc

flowframe with debris and other cells.

flowframe

first flowcytometer channel that can be used to separate debris
from the rest, e.g. "RED.B.HLin".

second flowcytometer channel that can be used to separate debris
from the rest, e.g. "YEL.B.HLin"

The function takes in a flowframe and identifies debris contained in the
 provided flowframe.

An approach to filter out and/or identify synechococcus type cyanobacteria cells from all particles measured via flow cytometry.
It combines known characteristics of these cyanobacteria strains alongside gating techniques developed by Mehrnoush, M. et al. (2015) <doi:10.1093/bioinformatics/btu677>
in the 'flowDensity' package to identify and separate these cyanobacteria cells from other cell types.
Aside the gating techniques in the 'flowDensity' package, an EM style clustering technique
is also developed to identify these cyanobacteria cell populations.

Oluwafemi Olusoji

cyanoFilter

debris_nc: gates out or assign indicators to debris particle.

Description

Usage

Arguments

Value

Details

See Also