dada2 (version 1.0.3)

derep-class: A class representing dereplicated sequences

Description

A list with the following three members.
  • $uniques: Named integer vector. Named by the unique sequence, valued by abundance.
  • $quals: Numeric matrix of average quality scores by position for each unique. Uniques are rows, positions are cols.
  • $map: Integer vector of length the number of reads, and value the index (in $uniques) of the unique to which that read was assigned.

This can be created from a FastQ sequence file using derepFastq

Arguments

See Also

derepFastq