hiReadsProcessor (version 1.8.2)

dereplicateReads: Removes duplicate sequences from DNAStringSet object.

Description

Given a DNAStringSet object, the function dereplicates reads and adds counts=X to the definition line to indicate replication.

Usage

dereplicateReads(dnaSet)

Arguments

dnaSet

DNAStringSet object to dereplicate.

Value

• DNAStringSet object with names describing frequency of repeat.

See Also

replicateReads, removeReadsWithNs, findBarcodes, splitByBarcode

Examples

dnaSet <- c("CCTGAATCCTGGCAATGTCATCATC", "ATCCTGGCAATGTCATCATCAATGG",
"ATCAGTTGTCAACGGCTAATACGCG", "ATCAATGGCGATTGCCGCGTCTGCA",
"CCGCGTCTGCAATGTGAGGGCCTAA", "GAAGGATGCCAGTTGAAGTTCACAC",
"CCTGAATCCTGGCAATGTCATCATC", "ATCCTGGCAATGTCATCATCAATGG",
"ATCAGTTGTCAACGGCTAATACGCG", "ATCAATGGCGATTGCCGCGTCTGCA",
"CCGCGTCTGCAATGTGAGGGCCTAA", "GAAGGATGCCAGTTGAAGTTCACAC")
dereplicateReads(dnaSet)