dfMarkStyle

dfMarkColor

humMarkColor

mydfMaColor

style column does not apply to cen. marks, only color.
dfMarkColor: Example General data for marks NOT position
humMarkColor: human bands' characteristics, from Adler (1994)
mydfMaColor: mark characteristics used in vignette of phylogeny

datasets

Plot idiograms of karyotypes, plasmids, circular chr. having a set of data.frames for chromosome data and optionally mark data. Two styles of chromosomes can be used: without or with visible chromatids (when not circular). Supports micrometers, cM and Mb or any unit. Two styles of centromeres are available: triangular and rounded; and six styles of marks: square (squareLeft), dots, cM (cMLeft), cenStyle, upArrow, downArrow; its legend (label) can be drawn inline or to the right of karyotypes. Idiograms can also be plotted in concentric circles. It is possible to calculate chromosome indices by Levan et al. (1964) <doi:10.1111/j.1601-5223.1964.tb01953.x>, karyotype indices of Watanabe et al. (1999) <doi:10.1007/PL00013869> and Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes by morphology Guerra (1986) and Levan et al. (1964).

Fernando Roa

idiogramFISH

Shiny App. Idiograms with Marks and Karyotype Indices

Mariana PC Telles 

dfMarkStyle function

dfMarkColor a data.frame with columns:<dl class="dl-horizontal">
<dt>markName</dt><dd>name of mark</dd>
<dt>markColor</dt><dd>use R colors</dd>
<dt>style</dt><dd>character, use square or dots, optional</dd>
<dt>protruding</dt><dd>numeric, modifies aspect of cM/cMLeft marks, see
parameter
<code>protruding</code> in <code><a rd-options="" href="/link/plotIdiograms?package=idiogramFISH&version=2.0.0" data-mini-rdoc="idiogramFISH::plotIdiograms">plotIdiograms</a></code>, optional</dd>
</dl>An object of class <code>data.frame</code> with 395 rows and 3 columns.
An object of class <code>data.frame</code> with 6 rows and 3 columns.

Format

Mark characteristics — dfMarkStyle

Mark characteristics

dfMarkStyle: Mark characteristics

Description

Usage

Arguments

Format

References

See Also