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DiscreteFDR (version 1.3.7)

Multiple Testing Procedures with Adaptation for Discrete Tests

Description

Multiple testing procedures described in the paper Döhler, Durand and Roquain (2018) "New FDR bounds for discrete and heterogeneous tests" . The main procedures of the paper (HSU and HSD), their adaptive counterparts (AHSU and AHSD), and the HBR variant are available and are coded to take as input a set of observed p-values and their discrete support under the null. A function to compute such p-values and supports for Fisher's exact tests is also provided, along with a wrapper allowing to apply discrete procedures directly from contingency tables.

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Install

install.packages('DiscreteFDR')

Monthly Downloads

318

Version

1.3.7

License

GPL-3

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Maintainer

Florian Junge

Last Published

February 8th, 2024

Functions in DiscreteFDR (1.3.7)

hist.DiscreteFDR

Histogram of Raw p-Values
amnesia

Amnesia and other drug reactions in the MHRA pharmacovigilance spontaneous reporting system
DBR

[HBR-\(\lambda\)] procedure
discrete.BH

[HSU], [HSD], [AHSU] and [AHSD] procedures
match.pvals

Matching raw p-values with supports
DiscreteFDR

DiscreteFDR
fast.Discrete

Fast application of discrete procedures
fisher.pvalues.support

Computing discrete p-values and their support for binomial and Fisher's exact tests
kernel

Kernel functions
plot.DiscreteFDR

Plot Method for DiscreteFDR objects
summary.DiscreteFDR

Summarizing Discrete FDR Results
print.DiscreteFDR

Printing DiscreteFDR results