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draw.oriloc(ori, main = "Title",
xlab = "Map position in Kb",
ylab = "Cumulated combined skew in Kb", las = 1, las.right = 3,
ta.mtext = "Cumul. T-A skew", ta.col = "pink", ta.lwd = 1,
cg.mtext = "Cumul. C-G skew", cg.col = "lightblue", cg.lwd = 1,
cds.mtext = "Cumul. CDS skew", cds.col = "lightgreen", cds.lwd = 1,
sk.col = "black", sk.lwd = 2,
add.grid = TRUE, ...)
oriloc
function.TRUE
a vertical grid is added to the plot.plot
.citation("seqinr")
oriloc
, rearranged.oriloc
,
extract.breakpoints
# need internet connection
#
# Example with Chlamydia trachomatis complete genome
#
ori <- oriloc()
draw.oriloc(ori)
#
# The same, using more options from function draw.oriloc()
#
draw.oriloc(ori,
main = expression(italic(Chlamydia~~trachomatis)~~complete~~genome),
ta.mtext = "TA skew", ta.col = "red",
cg.mtext = "CG skew", cg.col = "blue",
cds.mtext = "CDS skew", cds.col = "seagreen",
add.grid = FALSE)
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