edgeRFit: Analysis of the RFI RNA-seq data Using edgeR
Description
This function analyzes the RFI RNA-seq data and simulated datasets using
glmQLFTest, the Quasi-likelihood F-test in edgeR
package.
Usage
edgeRFit(counts, design, Effect)
Arguments
counts
a matrix of count data.
design
a design matrix.
Effect
the effect used to simulate data, either line2, or
time. This effect is considered as the main factor of interest where the
status of DE and EE genes was specified.