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meconetcomp (version 0.6.1)

Compare Microbial Networks of 'trans_network' Class of 'microeco' Package

Description

Compare microbial co-occurrence networks created from 'trans_network' class of 'microeco' package . This package is the extension of 'trans_network' class of 'microeco' package and especially useful when different networks are constructed and analyzed simultaneously.

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Install

install.packages('meconetcomp')

Monthly Downloads

433

Version

0.6.1

License

GPL-3

Issues

9

Pull Requests

0

Stars

10

Forks

0

Maintainer

Chi Liu

Last Published

February 24th, 2025

Functions in meconetcomp (0.6.1)

subnet_property

Calculate properties of sub-networks selected according to features in samples
soil_amp

The soil_amp data
soil_measure_diversity

The soil_measure_diversity data
meconetcomp

Introduction to meconetcomp package (https://github.com/ChiLiubio/meconetcomp)
edge_tax_comp

Taxonomic sum of linked nodes in edges across networks
edge_comp

Generate a microtable object with paired nodes distributions of edges across networks
get_edge_table

Get edge property table for each network
cohesionclass

Calculate the cohesion of samples for each network
get_node_table

Get node property table for each network
cal_network_attr

Calculate network topological property for each network
node_comp

Generate a microtable object with node distributions across networks
cal_module

Assign modules to each network
edge_node_distance

Perform the distance distribution of paired nodes in edges across networks.
subset_network

Extract subset of network according to the edge intersection of networks
robustness

Calculate robustness across networks.
vulnerability

Calculate the vulnerability of each node for each network
soil_amp_network

The soil_amp_network data
stool_met

The stool_met data