SeqGSEA (version 1.12.0)

estiExonNBstat: Calculate NB-statistics quantifying differential splicing for individual exons

Description

Calculate NB-statistics quantifying differential splicing for individual exons between two groups of samples compared.

Usage

estiExonNBstat(RCS)

Arguments

RCS

a ReadCountSet object after running exonTestability.

Value

A ReadCountSet object with the slot featureData updated.

References

Weichen Wang, Zhiyi Qin, Zhixing Feng, Xi Wang and Xuegong Zhang (2013). Identifying differentially spliced genes from two groups of RNA-seq samples. Gene, 518(1):164-170.

See Also

exonTestability, estiGeneNBstat

Examples

data(RCS_example, package="SeqGSEA")
RCS_example <- exonTestability(RCS_example, cutoff=5)
RCS_example <- estiExonNBstat(RCS_example)
head(fData(RCS_example))