lumi (version 2.24.0)

estimateIntensity: Estimate intensity of Illumina methylation data

Description

Estimate intensity of Illumina methylation data, which is the sum of Illumina methylated and unmethylated probe intensities

Usage

estimateIntensity(methyLumiM, returnType=c("ExpressionSet", "matrix"))

Arguments

methyLumiM

MethyLumiM-class object or eSet-class object, which include methylated and unmethylated probe intensities

returnType

determine whether return an ExpressionSet or matrix object

Value

An ExpressionSet or matrix object of methylation Intensity-value

Details

The Intensity basically is the sum of Illumina methylated and unmethylated probe intensities.

See Also

See Also as estimateBeta and estimateM

Examples

data(example.lumiMethy)
methyLumiIntensity = estimateIntensity(example.lumiMethy)
boxplot(methyLumiIntensity)