BiocGenerics (version 0.18.0)

dge: Accessors and generic functions used in the context of count datasets

Description

These generic functions provide basic interfaces to operations on and data access to count datasets.

Usage

counts(object, ...)
counts(object, ...) <- value
dispTable(object, ...)
dispTable(object, ...)  <- value
sizeFactors(object, ...)
sizeFactors(object, ...) <- value
conditions(object, ...)
conditions(object, ...) <- value
design(object, ...)
design(object, ...) <- value
estimateSizeFactors(object, ...)
estimateDispersions(object, ...)
plotDispEsts(object, ...)

Arguments

object

Object of class for which methods are defined, e.g., CountDataSet, DESeqSummarizedExperiment or ExonCountSet.

value

Value to be assigned to corresponding components of object; supported types depend on method implementation.

...

Further arguments, perhaps used by metohds

Details

For the details, please consult the manual pages of the methods in the DESeq, DESeq2, and DEXSeq packages and the package vignettes.