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flowMerge (version 2.20.0)

Cluster Merging for Flow Cytometry Data

Description

Merging of mixture components for model-based automated gating of flow cytometry data using the flowClust framework. Note: users should have a working copy of flowClust 2.0 installed.

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Version

Version

2.20.0

License

Artistic-2.0

Maintainer

Last Published

February 15th, 2017

Functions in flowMerge (2.20.0)

fitPiecewiseLinreg-methods

Methods for fitPiecewiseLinreg in flowMerge package

checkForRemoteErrors

Check output of snow clusters for errors

Cluster merging not meant to be called by the user

Extract the Normalized Entropy

A flowClust model fitted to the rituximab data for 1:10 clusters.

Update the flagOutliers slot in a flowMerge object

Merge clusters in flow cytometry data

Cluster merging not meant to be called by the user

flowMerge-package

Merging of mixture components for automated gating of flow cytometry data.

Map matrix of probabilities to class assignments.

Class "flowObj"

Merge mixture components

Methods for plotting flowMerge and flowObj classes

Generate a Function to Plot The Merging Tree

Create a flowObj object from a flowClust and flowFrame object

Initialize a SNOW cluster for use with flowMerge

summary-methods

Summary methods for flowMerge

Update uncertainties

fitPiecewiseLinreg

Fit Piecewise Linear Regression for a list of flowMerge Objects

flagOutliers-methods

Methods to update the flagOutliers slot in a flowMerge object.

Parellel call to flowMerge

Parallelized FlowClust

Describe a flowObj or flowMerge object

Split data in a flowMerge object by cluster

flowMerge-class

Class "flowMerge"

flowMerge-internal

Internal flowMerge functions