Generate a four-parent pedigree starting from inbred founders, using a single funnel
fourParentPedigreeSingleFunnel(
initialPopulationSize,
selfingGenerations,
nSeeds = 1L,
intercrossingGenerations
)The number of F1 lines generated
The number of selfing generations at the end of the pedigree
The number of progeny taken from each intercrossing line, or from each F1 if no intercrossing is specified. These lines are then selfed according to selfingGenerations
The number of generations of intercrossing, after each F2 line is generated.
An object of class detailedPedigree representing the experimental design, suitable for simulation using simulateMPCross.
Note that unlike fourParentPedigreeRandomFunnels, there is no intercrossing allowed in the single funnel case because the relevant haplotype probabilities assume randomly chosen funnels