Usage
g.getmeta(datafile, desiredtz = c(),
windowsizes = c(5, 900, 3600),daylimit = FALSE,
offset = c(0,0,0), scale = c(1,1,1),
tempoffset = c(0,0,0),do.bfen = FALSE, do.enmo = TRUE,
do.lfenmo = FALSE, do.en = FALSE,
do.hfen = FALSE, do.hfenplus = FALSE,
do.teLindert2013=FALSE,do.anglex=FALSE,do.angley=FALSE,do.anglez=FALSE,
do.roll_med_acc_x=FALSE,do.roll_med_acc_y=FALSE,do.roll_med_acc_z=FALSE,
do.dev_roll_med_acc_x=FALSE,do.dev_roll_med_acc_y=FALSE,do.dev_roll_med_acc_z=FALSE,
do.enmoa = FALSE,lb = 0.2,hb = 15, n = 4,meantempcal=c(),chunksize=c(),
selectdaysfile=c(),dayborder=0,...)
Arguments
datafile
name of accelerometer file
desiredtz
desired timezone: see also http://en.wikipedia.org/wiki/Zone.tab
windowsizes
Three values to indicate the lengths of the windows as in
c(window1,window2,window3): window1 is the short epoch length in seconds and by
default 5 this is the time window over which acceleration and angle metrics
are calculated, window2 is the long epoch length in seconds for which non-wear and
signal clipping are defined, default 900. However, window3 is the window length
of data used for non-wear detection and by default 3600 seconds. So, when window3
is larger than window2 we use overlapping windows, while if window2 equals window3
non-wear periods are assessed by non-overlapping windows.
daylimit
number of days to limit (roughly), if set to FALSE no daylimit
will be applied
offset
offset correction value per axis, usage:
value = scale(value,center = -offset, scale = 1/scale)
scale
scaling correction value per axis, usage:
value = scale(value,center = -offset, scale = 1/scale)
tempoffset
temperature offset correction value per axis, usage:
value = scale(value,center = -offset, scale = 1/scale)
+ scale(temperature, center = rep(averagetemperate,3), scale = 1/tempoffset)
do.bfen
if TRUE, calculate metric BFEN with band-pass filter
configuration set by lb and hb
do.enmo
if TRUE (default), calculate metric ENMO with negative values
rounded to zero
do.lfenmo
if TRUE, calculate metric LFENMO with low-pass filter
configuration set by hb
do.en
if TRUE, calculate metric EN
do.hfen
if TRUE, calculate metric HFEN with low-pass filter configuration
set by hb
do.hfenplus
if TRUE, calculate metric HFENplus with band-pass filter
configuration set by lb and hb
do.teLindert2013
if TRUE, calculate the 5 sec epoch Actiwatch count replication as described
by te Lindert et al 2013 in the journal SLEEP (volume 36, issue 5, page 781)
do.anglex
if TRUE, calculate the angle of the x-axis relative to the horizontal plane
(degrees) utilizing all three axes
do.angley
if TRUE, calculate the angle of the y-axis relative to the horizontal plane
(degrees) utilizing all three axes
do.anglez
if TRUE, calculate the angle of the z-axis relative to the horizontal plane
(degrees) utilizing all three axes
do.enmoa
if TRUE (default), calculate metric ENMOa which is equal to
metric ENMO but with the absolute taken from the Euclidean norm minus one.
do.roll_med_acc_x
if TRUE, calculate rolling median for the x axis
do.roll_med_acc_y
if TRUE, calculate rolling median for the y axis
do.roll_med_acc_z
if TRUE, calculate rolling median for the z axis
do.dev_roll_med_acc_x
if TRUE, calculate deviations from rolling
median for the x axis
do.dev_roll_med_acc_y
if TRUE, calculate deviations from rolling
median for the y axis
do.dev_roll_med_acc_z
if TRUE, calculate deviations from rolling
median for the z axis
lb
lower boundary of the frequency filter (in Hertz)
hb
upper boundary of the frequency filter (in Hertz)
n
order of the frequency filter
meantempcal
mean temperature corresponding to the data as used for
autocalibration. If autocalibration is not done or if temperature was not
available then leave blank (default)
chunksize
number between 0.2 and 1 to specificy the size of chunks to be
loaded as a fraction of a 24 hour period, e.g. 0.5 equals 12 hour chunks.
The default is 1 (24 hrs). For machines with less than 4Gb of RAM memory a value
below 1 is recommended.
...
Please ignore. Only used by the code internally when called from within
g.part1 with selectdaysfile specific.