itsadug (version 2.0)

gamtabs: Convert model summary into Latex/HTML table for knitr/R Markdown reports.

Description

Convert model summary into Latex/HTML table for knitr/R Markdown reports.

Usage

gamtabs(model, caption = " ", label = "tab.gam", pnames = NA,
  snames = NA, ptab = NA, stab = NA, ...)

Arguments

model

A GAM(M) model build in the package mgcv using gam or bam. Alternatively, a summary of a GAMM model could

caption

A string with the caption for the table.

label

A string for the label to refer to the table in the markdown document.

pnames

A vector with labels to relabel the rows in the parametric part of the summary.

snames

A vector with labels to relabel the rows in the smooth part of the summary.

ptab

A vector with labels to relabel the column names of the parametric summary.

stab

A vector with labels to relabel the column names of the smooth summary.

...

Optional additional arguments which are passed to xtable (see 'help(xtable)').

Value

• A vector with color values.

Note

This function is useful for markdown documents using the package knitr to integrate R code with Latex and Sweave. This function requires the package xtable.

See Also

summary.gam, gam, bam.

Other Functions for model inspection: fvisgam, inspect_random, plot_data, plot_parametric, plot_smooth, plot_topo, pvisgam

Examples

data(simdat)
# Model with random effect and interactions:
m1 <- bam(Y ~ Group+te(Time, Trial, by=Group),
    data=simdat)
summary(m1)
gamtabs(m1, caption='Summary of m1')
# See for more examples:
vignette("inspect", package="itsadug")