restez (version 1.0.0)

gb_fasta_get: Get fasta from GenBank

Description

Get sequence and definition data in FASTA format. Equivalent to rettype='fasta' in entrez_fetch.

Usage

gb_fasta_get(id, width = 70)

Arguments

id

character, sequence accession ID(s)

width

integer, maximum number of characters in a line

Value

named vector of fasta sequences, if no results found NULL

See Also

Other get: gb_definition_get, gb_organism_get, gb_record_get, gb_sequence_get, gb_version_get

Examples

# NOT RUN {
library(restez)
restez_path_set(filepath = tempdir())
demo_db_create(n = 5)
restez_connect()
(fasta <- gb_fasta_get(id = 'demo_1'))
(fastas <- gb_fasta_get(id = c('demo_1', 'demo_2')))


# delete demo after example
db_delete(everything = TRUE)
# }