cellHTS (version 1.42.0)

wellAnno: Access the annotation from a cellHTS object.

Description

These generic functions access the annotation data stored in the featureData slot of an object of class cellHTS.

Usage

wellAnno(object)
geneAnno(object)

Arguments

object

Object derived from class cellHTS.

Value

• wellAnno returns a factor of length equal to the total number of features (number of plates x number of wells per plate) indicating the contents of the wells. Corresponds to fData(object)[,"controlStatus"].

  geneAnno returns a vector of the same length as the number of features in object (number of plates x number of wells per plate) containing the gene IDs used in the screen. This corresponds to the contents of fData(object)[,"GeneID"].

  See cellHTS class for details.

References

Boutros, M., Bras, L.P. and Huber, W. (2006) Analysis of cell-based RNAi screens, Genome Biology 7, R66.

See Also

cellHTS