Description
An S4 class containing a table and parameter values
returned by callGenotypes
Details
- projectName
- In which project does this
run belong
- runName
- Which run was this. An
identifier for the sequence run
- marker
- Which
marker was this.
- genotypeTable
- A data frame with
variant counts, statistics, genotype calls and,
optionally, allele names.
- callMethod
- Which method
was used to call genotypes
- callParameters
- a named
list containing parameter values used in the call
- mappedToAlleles
- TRUE/FALSE whether an attempt was
made to map the variants to a db on known alleles.
- alleleDbName
- A list of objects of class
variantMap. Contains all variants returned
by mlgt