getAAMatrix returns a Hamming distance matrix for IUPAC ambiguous amino acid characters.
getAAMatrix
getAAMatrix(gap = 0)
value to assign to characters in the set c("-", ".").
c("-", ".")
A matrix of amino acid character distances with row and column names indicating the character pair.
matrix
Creates an amino acid distance matrix for seqDist. See getDNAMatrix for nucleotide distances.
# NOT RUN { getAAMatrix() # }
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