BacArena (version 1.0.1)

getCorrM: Function to compute and return correlation matrix

Description

The generic function getCorrM returns the correlation matrix of several objects.

Usage

getCorrM(object, reactions = TRUE, bacs = TRUE, substrates = TRUE)
"getCorrM"(object, reactions = TRUE, bacs = TRUE, substrates = TRUE)

Arguments

object

An object of class Eval.

reactions

A boolean indicating whether reactions should be included in correlation matrix

bacs

A boolean indicating whether bacteria should be included in correlation matrix

substrates

A boolean indicating whether substrates should be included in correlation matrix

Value

correlation matrix

Details

Returns correlation matrix which can be used for statistical analysis

See Also

Eval-class

Examples

data(Ec_core, envir = environment()) #get Escherichia coli core metabolic model
bac <- Bac(Ec_core,deathrate=0.05,
           growthlimit=0.05,growtype="exponential") #initialize a bacterium
arena <- Arena(n=20,m=20) #initialize the environment
addOrg(arena,bac,amount=10) #add 10 organisms
addSubs(arena,40) #add all possible substances
eval <- simEnv(arena,10)
getCorrM(eval)