# NOT RUN {
# download the genome of Arabidopsis thaliana from refseq
# and store the corresponding genome file in '_ncbi_downloads/genomes'
file_path <- getGenome( db = "refseq",
organism = "Arabidopsis thaliana",
path = file.path("_ncbi_downloads","genomes"))
Ath_genome <- read_genome(file_path, format = "fasta")
# download the genome of Arabidopsis thaliana from genbank
# and store the corresponding genome file in '_ncbi_downloads/genomes'
file_path <- getGenome( db = "genbank",
organism = "Arabidopsis thaliana",
path = file.path("_ncbi_downloads","genomes"))
Ath_genome <- read_genome(file_path, format = "fasta")
# }
# NOT RUN {
# }
Run the code above in your browser using DataLab