SubpathwayLNCE (version 1.0)

getInteGraphList: Get the reconstructed signal pathway graphs

Description

Get the reconstructed KEGG signal pathway graphs embedded by lncRNAs of competitive regulation.

Usage

getInteGraphList(graphList,relations)

Arguments

graphList

A graphList. There nodes must be represented by genes.

relations

A data frame. It contains two columns, the first is lncRNA names and the second is its target names.

Value

A graph list.

Details

The argument "relations" represents user-interested lncRNA-target interactions, which can be returned from the GetExampleData.

See Also

plotGraphL, getLocSubGraphLnc, GetExampleData

Examples

## Not run: 
# ### Integrate lncRNAs of competitive regulation into KEGG pathway graphs ###
#   LncGenePairs<-GetExampleData(exampleData="LncGenePairs")
#   g2<-GetExampleData(exampleData="g2")
#   interUMGraph<-getInteGraphList(g2,LncGenePairs)
#   #interUMGraph<-getInteUMGraph(LncGenePairs)
# ### get user-interested lncRNAs and genes sets.
#   #geneLnc<-GetExampleData(exampleData="geneLnc")
# # get locate subpathways.
#   #sub<-getLocSubGraphLnc(geneLnc,interUMGraph,type="gene_lncRNA",n=1,s=8)
#   #SubcodeLncResult<-identifyLncGraphW(geneLnc,sub,type="gene_lncRNA",bet=1)
#   #resultT<-printGraphW(SubcodeLncResult,detail=TRUE)
# 
#  ## End(Not run)