getReadCountPerRestrictionFragment

getReadCountPerRestrictionFragment,r3Cseq-method

object


		character. To count all reads found in the particular restriction fragment uses wholeReads option.  
		To count reads found around the edge of restriction fragment both 5'utr and 3'utr uses adjacentFragmentEndsReads
		option (default=wholeReads)
	

getReadsMethod


		Numeric. The number of excluded fragments around the viewpoint, reads found in these fragments
		will be removed from the analysis (default=2)
	

nFragmentExcludedReadsNearViewpoint


  Counts the number of reads from 3C-Seq data per each restriction fragment


This package is an implementation of data analysis for the
long-range interactions from 3C-seq assay.

Supat Thongjuea

r3Cseq

Analysis of Chromosome Conformation Capture and Next-generation
Sequencing (3C-seq)

getReadCountPerRestrictionFragment function

character. To count all reads found in the particular restriction fragment uses wholeReads option.  
		To count reads found around the edge of restriction fragment both 5'utr and 3'utr uses adjacentFragmentEndsReads
		option (default=wholeReads)

Numeric. The number of excluded fragments around the viewpoint, reads found in these fragments
		will be removed from the analysis (default=2)

Counts the number of reads from 3C-Seq data per each restriction fragment

getReadCountPerRestrictionFragment: count reads per resitrcition fragment

Description

Usage

Arguments

Value

See Also

Examples