imageHTS (version 1.22.0)

getWellFeatures: Get well metadata, features and annotation information

Description

Get well metadata, features and annotation information.

Usage

getWellFeatures(x, uname, feature=TRUE)

Arguments

x

An imageHTS object.

uname

a character vector, containing well names. See getUnames for details.

feature

A character vectors containing the requested features. Default is TRUE, returning all well features.

Value

Returns a data frame containing well features.

Details

getWellFeatures return fData, the well features loaded during the configure and annotate steps. Features include: controlStatus, the well content status derived from \'plateconf.txt\'.

See Also

fData, configure, annotate

Examples

## initialize imageHTS object using the local submorph screen
local = tempdir()
server = system.file('submorph', package='imageHTS')
x = parseImageConf('conf/imageconf.txt', localPath=local, serverURL=server)
x = configure(x, 'conf/description.txt', 'conf/plateconf.txt', 'conf/screenlog.txt')
x = annotate(x, 'conf/annotation.txt')

## select non-empty wells
unames = setdiff(getUnames(x), getUnames(x, content='empty'))
getWellFeatures(x, unames)