DMRcaller (version 1.4.2)

getWholeChromosomes: Get whole chromosomes from methylation data

Description

Returns a GRanges object spanning from the first cytocine until the last one on each chromosome

Usage

getWholeChromosomes(methylationData)

Arguments

methylationData

the methylation data stored as a GRanges object with four metadata columns (see methylationDataList).

Value

a GRanges object will all chromosomes.

Examples

# load the methylation data
data(methylationDataList)

# get all chromosomes
chromosomes <- getWholeChromosomes(methylationDataList[["WT"]])