get_name


a vector of brain structure IDs, e.g. c('Allen:10657','Allen:10173')


structure_ids


Returns the full name of brain regions given the structure IDs, e.g. 'Allen:10657' as used throughout the ABAEnrichment package. The full name is composed of an acronym and the name as used by the Allen Brain Atlas project [1-2]. 


The package ABAEnrichment is designed to test for
enrichment of user defined candidate genes in the set of
expressed genes in different human brain regions. The core
function 'aba_enrich' integrates the expression of the
candidate gene set (averaged across donors) and the structural
information of the brain using an ontology, both provided by
the Allen Brain Atlas project. 'aba_enrich' interfaces the
ontology enrichment software FUNC to perform the statistical
analyses. Additional functions provided in this package like
'get_expression' and 'plot_expression' facilitate exploring the
expression data.

Steffi Grote

ABAEnrichment

Gene expression enrichment in human brain regions

get_name function

a vector of brain structure IDs, e.g. c('Allen:10657','Allen:10173')

Returns the full name of brain regions given the structure IDs, e.g. 'Allen:10657' as used throughout the ABAEnrichment package. The full name is composed of an acronym and the name as used by the Allen Brain Atlas project [1-2].

get_name: Get the full name of a brain region given structure ids

Description

Usage

Arguments

Value

References

See Also

Examples