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clampSeg (version 1.2-0)

Idealisation of Patch Clamp Recordings

Description

Implements the model-free multiscale idealisation approaches: Jump-Segmentation by MUltiResolution Filter (JSMURF), Hotz et al. (2013) , JUmp Local dEconvolution Segmentation filter (JULES), Pein et al. (2018) , and Heterogeneous Idealization by Local testing and DEconvolution (HILDE), Pein et al. (2021) . Further details on how to use them are given in the accompanying vignette.

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Version

Install

install.packages('clampSeg')

Monthly Downloads

147

Version

1.2-0

License

GPL-3

Maintainer

Pein Florian

Last Published

June 27th, 2025

Functions in clampSeg (1.2-0)

clampSeg-package

Idealisation of Patch Clamp Recordings
gramA

Patch clamp recording of gramicidin A
hilde

HILDE
deconvolveLocally

Local deconvolution
getCritVal

Critical values
createLocalList

Precomputes quantities for hilde and improveSmallScales
improveSmallScales

Improves small scales
jsmurf

JSMURF
lowpassFilter

Lowpass filtering
stepDetection

Detection of steps / jumps by a multiresolution criterion
jules

JULES