grofit (version 1.1.1-1)

grofit: Standard workflow

Description

The function enables the user to run all features of the grofit package as a standard workflow. First several growth curves are fitted by usage of the function gcFit. Afterwards respecting dose-response curves are estimated from by the function drFit.

Usage

grofit(time, data, ec50 = FALSE, control = grofit.control())

Arguments

time

Numeric matrix, consisting of n columns for the time points and m rows for the different experiments.

data

Data frame consisting of 3+n columns, containing three coulumns of additional information and n columns of growth data corresponding to time. 1. column, character as an experiment identifier; 2. column: character, additional information about respecting experiment; 3. column: concentration of substrate of a compound under which the experiment is obtained; 4.-(n+3). column: growth data corresponding to the time points in time.

ec50

Logical, indicating wether dose-response curves and EC50 should be estimated after the growth curve fit.

control

Object of class grofit.control containing a list of options specified by grofit.control.

Value

time

Numeric matrix, equivalent to input parameter time.

data

Data frame, equivalent to input parameter data.

gcFit

Object of class gcFit.

drFit

Object of class drFit.

control

Object of class grofit.control containing a list of options passed to the function as control.

See Also

grofit.time, grofit.data