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spdep (version 1.3-3)

Spatial Dependence: Weighting Schemes, Statistics

Description

A collection of functions to create spatial weights matrix objects from polygon 'contiguities', from point patterns by distance and tessellations, for summarizing these objects, and for permitting their use in spatial data analysis, including regional aggregation by minimum spanning tree; a collection of tests for spatial 'autocorrelation', including global 'Morans I' and 'Gearys C' proposed by 'Cliff' and 'Ord' (1973, ISBN: 0850860369) and (1981, ISBN: 0850860814), 'Hubert/Mantel' general cross product statistic, Empirical Bayes estimates and 'Assunção/Reis' (1999) Index, 'Getis/Ord' G ('Getis' and 'Ord' 1992) and multicoloured join count statistics, 'APLE' ('Li 'et al.' ) , local 'Moran's I', 'Gearys C' ('Anselin' 1995) and 'Getis/Ord' G ('Ord' and 'Getis' 1995) , 'saddlepoint' approximations ('Tiefelsdorf' 2002) and exact tests for global and local 'Moran's I' ('Bivand et al.' 2009) and 'LOSH' local indicators of spatial heteroscedasticity ('Ord' and 'Getis') . The implementation of most of these measures is described in 'Bivand' and 'Wong' (2018) , with further extensions in 'Bivand' (2022) . 'Lagrange' multiplier tests for spatial dependence in linear models are provided ('Anselin et al'. 1996) , as are 'Rao' score tests for hypothesised spatial 'Durbin' models based on linear models ('Koley' and 'Bera' 2023) . From 'spdep' and 'spatialreg' versions >= 1.2-1, the model fitting functions previously present in this package are defunct in 'spdep' and may be found in 'spatialreg'.

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Install

install.packages('spdep')

Monthly Downloads

40,858

Version

1.3-3

License

GPL (>= 2)

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Maintainer

Roger Bivand

Last Published

February 7th, 2024

Functions in spdep (1.3-3)

droplinks

Drop links in a neighbours list
geary.test

Geary's C test for spatial autocorrelation
globalG.test

Global G test for spatial autocorrelation
geary

Compute Geary's C
hotspot

Cluster classifications for local indicators of spatial association
joincount.test

BB join count statistic for k-coloured factors
include.self

Include self in neighbours list
joincount.multi

BB, BW and Jtot join count statistic for k-coloured factors
geary.mc

Permutation test for Geary's C statistic
joincount.mc

Permutation test for same colour join count statistics
knearneigh

K nearest neighbours for spatial weights
graphneigh

Graph based spatial weights
lee.test

Lee's L test for spatial autocorrelation
grid2nb

Construct neighbours for a GridTopology
eire

Eire data sets
listw2sn

Spatial neighbour sparse representation
edit.nb

Interactive editing of neighbours lists
lee

Compute Lee's statistic
local_joincount_bv

Calculate the local bivariate join count
localGS

A local hotspot statistic for analysing multiscale datasets
knn2nb

Neighbours list from knn object
lag.listw

Spatial lag of a numeric vector
localmoran_bv

Compute the Local Bivariate Moran's I Statistic
lm.LMtests

Rao's score (a.k.a Lagrange Multiplier) diagnostics for spatial dependence in linear models
mat2listw

Convert a square spatial weights matrix to a weights list object
lm.morantest

Moran's I test for residual spatial autocorrelation
localmoran.exact

Exact local Moran's Ii tests
localmoran.sad

Saddlepoint approximation of local Moran's Ii tests
lm.morantest.exact

Exact global Moran's I test
lm.morantest.sad

Saddlepoint approximation of global Moran's I test
nb2mat

Spatial weights matrices for neighbours lists
moran

Compute Moran's I
nb2listw

Spatial weights for neighbours lists
nb2listwdist

Distance-based spatial weights for neighbours lists
probmap

Probability mapping for rates
read.gal

Read a GAL lattice file into a neighbours list
local_joincount_uni

Calculate the local univariate join count
prunemst

Prune a Minimun Spanning Tree
poly2nb

Construct neighbours list from polygon list
nb2blocknb

Block up neighbour list for location-less observations
sp.correlogram

Spatial correlogram
lee.mc

Permutation test for Lee's L statistic
prunecost

Compute cost of prune each edge
skater

Spatial 'K'luster Analysis by Tree Edge Removal
localC

Compute Local Geary statistic
nb2lines

Use vector files for import and export of weights
moran.plot

Moran scatterplot
localG

G and Gstar local spatial statistics
plot.skater

Plot the object of skater class
localmoran

Local Moran's I statistic
moran.test

Moran's I test for spatial autocorrelation
moran.mc

Permutation test for Moran's I statistic
nb.set.operations

Set operations on neighborhood objects
set.mcOption

Options for parallel support
nbcosts

Compute cost of edges
spweights.constants

Provides constants for spatial weights matrices
spdep

Return package version number
subset.listw

Subset a spatial weights list
p.adjustSP

Adjust local association measures' p-values
ssw

Compute the sum of dissimilarity
nb2WB

Output spatial weights for WinBUGS
nb2INLA

Output spatial neighbours for INLA
subset.nb

Subset a neighbours list
set.spChkOption

Control checking of spatial object IDs
summary.nb

Print and summary function for neighbours and weights lists
Rotation

Rotate a set of point by a certain angle
tri2nb

Neighbours list from tri object
read.gwt2nb

Read and write spatial neighbour files
write.nb.gal

Write a neighbours list as a GAL lattice file
moran_bv

Compute the Global Bivariate Moran's I
nbdists

Spatial link distance measures
nblag

Higher order neighbours lists
plot.nb

Plot a neighbours list
mstree

Find the minimal spanning tree
plot.mst

Plot the Minimum Spanning Tree
spdep-defunct

Defunct Functions in Package spdep
sp.mantel.mc

Mantel-Hubert spatial general cross product statistic
is.symmetric.nb

Test a neighbours list for symmetry
tolerance.nb

Function to construct edges based on a tolerance angle and a maximum distance
aggregate.nb

Aggregate a spatial neighbours object
EBlocal

Local Empirical Bayes estimator
choynowski

Choynowski probability map values
LOSH.cs

Chi-square based test for local spatial heteroscedasticity
Graph Components

Depth First Search on Neighbor Lists
diffnb

Differences between neighbours lists
SD.RStests

Rao's score and adjusted Rao's score tests of linear hypotheses for spatial Durbin and spatial Durbin error models
autocov_dist

Distance-weighted autocovariate
airdist

Measure distance from plot
EBImoran.mc

Permutation test for empirical Bayes index
bhicv

Data set with 4 life condition indices of Belo Horizonte region
oldcol

Columbus OH spatial analysis data set - old numbering
dnearneigh

Neighbourhood contiguity by distance
LOSH

Local spatial heteroscedasticity
EBest

Global Empirical Bayes estimator
LOSH.mc

Bootstrapping-based test for local spatial heteroscedasticity
card

Cardinalities for neighbours lists
columbus

Columbus OH spatial analysis data set
cell2nb

Generate neighbours list for grid cells