taxa (version 0.3.4)

hierarchies: Make a set of many hierarchy() class objects

Description

Make a set of many hierarchy() class objects. This is just a thin wrapper over a standard list.

Usage

hierarchies(..., .list = NULL)

Arguments

...

Any number of object of class hierarchy()

.list

Any number of object of class hierarchy() in a list

Value

An R6Class object of class hierarchy()

See Also

Other classes: hierarchy(), taxa(), taxmap(), taxon_database(), taxon_id(), taxon_name(), taxon_rank(), taxonomy(), taxon()

Examples

# NOT RUN {
x <- taxon(
  name = taxon_name("Poaceae"),
  rank = taxon_rank("family"),
  id = taxon_id(4479)
)
y <- taxon(
  name = taxon_name("Poa"),
  rank = taxon_rank("genus"),
  id = taxon_id(4544)
)
z <- taxon(
  name = taxon_name("Poa annua"),
  rank = taxon_rank("species"),
  id = taxon_id(93036)
)
hier1 <- hierarchy(z, y, x)

a <- taxon(
  name = taxon_name("Felidae"),
  rank = taxon_rank("family"),
  id = taxon_id(9681)
)
b <- taxon(
  name = taxon_name("Puma"),
  rank = taxon_rank("genus"),
  id = taxon_id(146712)
)
c <- taxon(
  name = taxon_name("Puma concolor"),
  rank = taxon_rank("species"),
  id = taxon_id(9696)
)
hier2 <- hierarchy(c, b, a)

d <- taxon(
  name = taxon_name("Chordata"),
  rank = taxon_rank("phylum"),
  id = taxon_id(158852)
)
e <- taxon(
  name = taxon_name("Vertebrata"),
  rank = taxon_rank("subphylum"),
  id = taxon_id(331030)
)
f <- taxon(
  name = taxon_name("Teleostei"),
  rank = taxon_rank("class"),
  id = taxon_id(161105)
)
g <- taxon(
  name = taxon_name("Salmonidae"),
  rank = taxon_rank("family"),
  id = taxon_id(161931)
)
h <- taxon(
  name = taxon_name("Salmo"),
  rank = taxon_rank("genus"),
  id = taxon_id(161994)
)
i <- taxon(
  name = taxon_name("Salmo salar"),
  rank = taxon_rank("species"),
  id = taxon_id(161996)
)
hier3 <- hierarchy(d, e, f, g, h, i)

hiers <- hierarchies(hier1, hier2, hier3)

# pass into the .list parameter
hierarchies(.list = list(hier1, hier2, hier3))
# }

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