hlaAttrBagClass


    The class of a HIBAG model, and its instance is returned from
<code><a rd-options="" href="/link/hlaAttrBagging?package=HIBAG&version=1.8.3" data-mini-rdoc="HIBAG::hlaAttrBagging">hlaAttrBagging</a></code>.


Genetics

It is a software package for imputing HLA types using SNP data,
and relies on a training set of HLA and SNP genotypes. HIBAG can be used
by researchers with published parameter estimates instead of requiring
access to large training sample datasets. It combines the concepts of
attribute bagging, an ensemble classifier method, with haplotype inference
for SNPs and HLA types. Attribute bagging is a technique which improves
the accuracy and stability of classifier ensembles using bootstrap
aggregating and random variable selection.

Xiuwen Zheng

HIBAG

HLA Genotype Imputation with Attribute Bagging

hlaAttrBagClass function

The class of a HIBAG model, and its instance is returned from
<code><a href="hlaAttrBagging" rd-options="">hlaAttrBagging</a></code>.

The class of HIBAG model

n.samp

the total number of candidate SNP predictors

n.snp

sample.id

snp.id

snp.position

a vector of characters with the format of
        ``A allele/B allele''

snp.allele

snp.allele.freq

hla.locus

hla.allele

hla.freq

the human genome reference, such like "hg19"

assembly

model

an optional list:
        <code>platform</code> -- supported platform(s);
        <code>information</code> -- other information, like training sets, authors;
        <code>warning</code> -- any warning message

hlaAttrBagClass: The class of HIBAG model

Description

Arguments

Value

See Also