hlaSNPGenoClass


    The class of SNP genotypes, and its instance is returned from
<code><a rd-options="" href="/link/hlaMakeSNPGeno?package=HIBAG&version=1.8.3" data-mini-rdoc="HIBAG::hlaMakeSNPGeno">hlaMakeSNPGeno</a></code>.


Genetics

It is a software package for imputing HLA types using SNP data,
and relies on a training set of HLA and SNP genotypes. HIBAG can be used
by researchers with published parameter estimates instead of requiring
access to large training sample datasets. It combines the concepts of
attribute bagging, an ensemble classifier method, with haplotype inference
for SNPs and HLA types. Attribute bagging is a technique which improves
the accuracy and stability of classifier ensembles using bootstrap
aggregating and random variable selection.

Xiuwen Zheng

HIBAG

HLA Genotype Imputation with Attribute Bagging

hlaSNPGenoClass function

The class of SNP genotypes, and its instance is returned from
<code><a href="hlaMakeSNPGeno" rd-options="">hlaMakeSNPGeno</a></code>.

The class of SNP genotypes

a genotype matrix,
        ``# of SNPs'' - by - ``# of individuals''

genotype

sample.id

snp.id

snp.position

a vector of characters with a format of
        ``A allele/B allele''

snp.allele

the human genome reference, such like "hg19"

hlaSNPGenoClass: The class of SNP genotypes

Description

Arguments

Value

See Also