protViz (version 0.6.8)

iRTpeptides: iRT peptides - independent retention time peptides

Description

iRTpeptides data are used for genSwathIonLib rt normalization assuming.

Format

contains a table

References

Using iRT, a normalized retention time for more targeted measurement of peptides. Escher C, Reiter L, MacLean B, Ossola R, Herzog F, Chilton J, MacCoss MJ, Rinner O. Source Proteomics. 2012 Apr;12(8):1111-21. doi: 10.1002/pmic.201100463.

Examples

# NOT RUN {
    plot(sort(iRTpeptides$rt))

    plot(pim<-parentIonMass(as.character(iRTpeptides$peptide)) ~ iRTpeptides$rt)

# }