CNVrd2 (version 1.10.2)

identifyPolymorphicRegion: Identity polymorphic regions.

Description

Using quantile values to identify polymorphic regions.

Usage

identifyPolymorphicRegion(Object, ...)

Arguments

Object

An object of class CNVrd2

...

polymorphicRegionObjectAn object obtained from the process of identifying poplymorphic regions.

Optional arguments.

Value

putativeBoundary

resultant boundaries based on quantile thresholds.

subRegionMatrix

segmentation-score matrix of sub-regions derived from the segmentation process.

subRegion

sub-regions derived from the segmentation process.

mQuantile

matrix of quantile values.

mSD

data frame including subregions and their standard deviations.

Vst

data frame of Vst between populations if VstTest = TRUE.

SSofPolymorphicRegions

segmentation scores of polymorphic regions.

See Also

plotPolymorphicRegion

Examples

## Not run: 
# 
# fcgr3PolymorphicRegion <- identifyPolymorphicRegion(Object = objectCNVrd2,
#                                                     segmentObject = resultSegment, 
#                                                     thresholdForPolymorphicRegions = c(0.75, 0.25),
#                                                     plotLegend = FALSE)
# 
# 
# ## End(Not run)