CHRONOS (version 1.0.3)

importExpressions: Import gene and miRNA expressions from

Description

Import gene and miRNA expressions from

Usage

importExpressions(data, type, sep, org, mRNAnomenclature)

Arguments

data

Expressions data filename or matrix.

type

Expressions data type. (or mRNA expressions, type=. Availiable gene expression nomenclature can be found in convertNomenclature. For miRNA expressions, type='miRNA'.

sep

File delimiter.

org

KEGG organism identifier

mRNAnomenclature

Nomenclature of user's mRNA expressions

Value

.

Details

• Import gene expressions data from CHRONOS/extdata/Input/.txt or a supplied matrix.
• Import miRNA expressions data from CHRONOS/extdata/Input/.txt or a supplied matrix.

Examples

# Example

load(system.file('extdata', 'Examples//data.RData', package='CHRONOS'))

importExpressions(data=mRNAexpr, type='mRNA', 
                mRNAnomenclature='entrezgene', sep='\t', org='hsa')
importExpressions(data=miRNAexpr, type='miRNA', sep='\t', org='hsa')