import_qiime_sample_data

(Required). A character string or
  connection. That is, any suitable <code>file</code> argument to
  the <code><a rd-options="" href="/link/read.table?package=phyloseq&version=1.12.2" data-mini-rdoc="phyloseq::read.table">read.table</a></code> function. The name of the
  QIIME map file required for processing pyrosequencing
  tags in QIIME as well as some of the post-clustering
  analysis. This is a required input file for running
  QIIME. Its strict formatting specification is expected by
  this function, do not attempt to modify it manually once
  it has worked properly in QIIME.

mapfilename


  QIIME produces several files that can be analyzed in the
  phyloseq-package, This includes the map-file, which is an
  important <em>input</em> to QIIME that can also indicate
  sample covariates. It is converted naturally to the
  sample_data component data type in phyloseq-package,
  based on the R data.frame.


phyloseq provides a set of classes and tools
to facilitate the import, storage, analysis, and
graphical display of microbiome census data.

Paul J McMurdie

phyloseq

Handling and analysis of high-throughput microbiome
census data.

import_qiime_sample_data function

(Required). A character string or
  connection. That is, any suitable <code>file</code> argument to
  the <code><a rd-options='' href='read.table'>read.table</a></code> function. The name of the
  QIIME map file required for processing pyrosequencing
  tags in QIIME as well as some of the post-clustering
  analysis. This is a required input file for running
  QIIME. Its strict formatting specification is expected by
  this function, do not attempt to modify it manually once
  it has worked properly in QIIME.

import_qiime_sample_data: Import just `sample_data` file from QIIME pipeline.

Description

Usage

Arguments

Value

Details

See Also

Examples