intensities.by.color: intensities.by.color
Description
Rearranges information from "M" and "U" slots of a RnBeadsRawSet object by color channer.
Usage
intensities.by.color(raw.set, address.rownames = TRUE, add.oob = TRUE, add.controls = TRUE, add.missing = TRUE)
Arguments
raw.set
RnBeadRawSet object
address.rownames
if TRUE the rows of the returned matrices are named with the with the correspoding Illumina probe addresses
add.oob
if TRUE the "out-of-band" intensities are included
add.controls
if TRUE the control probe intensities are included
add.missing
if TRUE the rows for the probes missing in raw.set is imputed with NA values
Value
a list with elements Cy3 and Cy5 containing average bead intensities
measured for each probe in the green and red channels, respectively