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MCMCglmm (version 2.36)
MCMC Generalised Linear Mixed Models
Description
Fits Multivariate Generalised Linear Mixed Models (and related models) using Markov chain Monte Carlo techniques (Hadfield 2010 J. Stat. Soft.).
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Install
install.packages('MCMCglmm')
Monthly Downloads
5,490
Version
2.36
License
GPL (>= 2)
Issues
0
Pull Requests
0
Stars
2
Forks
1
Repository
https://github.com/jarrodhadfield/MCMCglmm
Maintainer
Jarrod Hadfield
Last Published
May 6th, 2024
Functions in MCMCglmm (2.36)
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Ptensor
Tensor of Sample (Mixed) Central Moments
kunif
Central Moments of a Uniform Distribution
gelman.prior
Prior Covariance Matrix for Fixed Effects.
evalDtensor
Evaluates a list of (mixed) partial derivatives
mult.memb
Design Matrices for Multiple Membership Models
list2bdiag
Forms the direct sum from a list of matrices
me
Design Matrix for Measurement Error Model
path
Design Matrix for Path Analyses
posterior.mode
Estimates the marginal parameter modes using kernel density estimation
pkk
Probability that all multinomial categories have a non-zero count.
at.set
Incidence Matrix of Combined Levels within a Factor
posterior.evals
Posterior distribution of eigenvalues
posterior.inverse
Posterior distribution of matrix inverse
predict.MCMCglmm
Predict method for GLMMs fitted with MCMCglmm
rbv
Random Generation of MVN Breeding Values and Phylogenetic Effects
simulate.MCMCglmm
Simulate method for GLMMs fitted with MCMCglmm
krzanowski.test
Krzanowski's Comparison of Subspaces
residuals.MCMCglmm
Residuals form a GLMM fitted with MCMCglmm
rIW
Random Generation from the Conditional Inverse Wishart Distribution
inverseA
Inverse Relatedness Matrix and Phylogenetic Covariance Matrix
sir
Design Matrix for Simultaneous and Recursive Relationships between Responses
prunePed
Pedigree pruning
knorm
(Mixed) Central Moments of a Multivariate Normal Distribution
summary.MCMCglmm
Summarising GLMM Fits from MCMCglmm
plot.MCMCglmm
Plots MCMC chains from MCMCglmm using plot.mcmc
rtcmvnorm
Random Generation from a Truncated Conditional Normal Distribution
rtnorm
Random Generation from a Truncated Normal Distribution
plotsubspace
Plots covariance matrices
posterior.ante
Posterior distribution of ante-dependence parameters
posterior.cor
Transforms posterior distribution of covariances into correlations
sm2asreml
Converts sparseMatrix to asreml's giv format
spl
Orthogonal Spline Design Matrix
KPPM
Kronecker Product Permutation Matrix
Dexpressions
List of unevaluated expressions for (mixed) partial derivatives of fitness with respect to linear predictors.
MCMCglmm-package
Multivariate Generalised Linear Mixed Models
PlodiaR
Resistance of Indian meal moth caterpillars to the granulosis virus PiGV.
PlodiaPO
Phenoloxidase measures on caterpillars of the Indian meal moth.
BTped
Blue Tit Pedigree
BTdata
Blue Tit Data for a Quantitative Genetic Experiment
MCMCglmm
Multivariate Generalised Linear Mixed Models
Dtensor
Tensor of (mixed) partial derivatives
buildV
Forms expected (co)variances for GLMMs fitted with MCMCglmm
Ddivergence
d-divergence
commutation
Commutation Matrix
dcmvnorm
Density of a (conditional) multivariate normal variate
SShorns
Horn type and genders of Soay Sheep
at.level
Incidence Matrix of Levels within a Factor
Tri2M
Lower/Upper Triangle Elements of a Matrix
PlodiaRB
Resistance (as a binary trait) of Indian meal moth caterpillars to the granulosis virus PiGV.