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SCOPer

SCOPer (Spectral Clustering for clOne Partitioning) provides a computational framework for the identification of B cell clonal relationships from Adaptive Immune Receptor Repertoire sequencing (AIRR-Seq) data. It includes methods for assigning clonal identifiers using sequence identity, hierarchical clustering, and spectral clustering. SCOPer is part of the Immcantation analysis framework.

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Version

Install

install.packages('scoper')

Monthly Downloads

504

Version

1.5.0

License

AGPL-3

Maintainer

Susanna Marquez

Last Published

May 5th, 2026

Functions in scoper (1.5.0)

plotCloneSummary

Plot clonal clustering summary
ExampleDb

Example database
spectralClones

Spectral clustering method for clonal partitioning
identicalClones

Sequence identity method for clonal partitioning
ScoperClones-class

S4 class containing clonal assignments and summary data
scoper-package

scoper: Spectral Clustering-Based Method for Identifying B Cell Clones
scoper

The SCOPer package
hierarchicalClones

Hierarchical clustering method for clonal partitioning