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taxlist (version 0.2.3)

Handling Taxonomic Lists

Description

Handling taxonomic lists through objects of class 'taxlist'. This package provides functions to import species lists from 'Turboveg' () and the possibility to create backups from resulting R-objects. Also quick displays are implemented as summary-methods.

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Install

install.packages('taxlist')

Monthly Downloads

264

Version

0.2.3

License

GPL (>= 2)

Issues

14

Pull Requests

0

Stars

12

Forks

4

Maintainer

Miguel Alvarez

Last Published

September 12th, 2022

Functions in taxlist (0.2.3)

df2taxlist

Convert data frames and strings into taxlist objects
as.list

Coerce taxlist objects to lists.
count_taxa

Count taxa within a taxlist object.
dissect_name

Dissect Scientific Names into their Elements
overview_taxlist

Function producing the overview of whole object.
merge_taxa

Merge concepts or move names
levels

Set and retrieves hierarchical levels
get_children

Retrieve children or parents of taxon concepts
match_names

Search matchings between character and taxlist objects
overview_taxon

Function producing the overview of single taxon concepts.
print_name

Format usage names for publications
summary

Print overviews for taxlist Objects and their content
subset

Subset method for taxlist objects
replace_x

Data manipulation.
taxon_views

Management of concept views in taxonomic lists.
tnrs

Taxonomic Name Resolution Service
indented_list

Print hierarchical structure in indented lists
sort_backups

Sorting files with time stamp and suffix
tax2traits

Set taxonomic information as taxon traits
taxlist-class

An S4 class to represent taxonomic lists.
taxon_relations

Retrieve or replace slot taxonRelations in taxlist objects
taxon_traits

Manipulation of taxon traits in taxlist objects.
taxon_names

Handle information on taxon usage names.
taxlist-package

taxlist: Handling taxonomic lists.
two2one_df

Inserting new rows and columns by merging two data frames
tv2taxlist

Import species lists from Turboveg databases
Extract

Extract or Replace Parts of taxlist Objects
Deprecated-functions

Deprecated functions
clean_once_taxlist

One run clean function
add_suffix

Add a suffix when strings are identical
Easplist-data

List of vascular plants from East Africa
add_nacolumn

Filling missed columns with NAs
accepted_name

Manage accepted names, synonyms and basionyms
clean_strings

Cleaning character strings.
backup_object

Make and load backups of R objects
clean

Delete orphaned records