Function to add a step to a previously created provenance recording session. Note: this function is in beta and not yet final, changes should be expected so exercise caution when using it.
labkey.provenance.addRecordingStep(baseUrl=NULL, folderPath, provenanceParams = NULL)
a string specifying the baseUrl
for the labkey server
a string specifying the folderPath
the provenance parameter object which contains the options to include in this recording step
The generated recording ID which can be used in subsequent steps (or queries that support provenance).
Function to add a step to a previously created provenance recording. The recording ID that was obtained from a previous startRecording function call must be passed into the provenanceParams config. This is a premium feature and requires the Provenance LabKey module to function correctly.
labkey.provenance.createProvenanceParams
,
labkey.provenance.startRecording
,
labkey.provenance.stopRecording
# NOT RUN {
## start a provenance recording and add a recording step
library(Rlabkey)
mi <- data.frame(lsid=c("urn:lsid:labkey.com:Sample.251.MySamples:sample1",
"urn:lsid:labkey.com:Sample.251.MySamples:sample2"))
p <- labkey.provenance.createProvenanceParams(name="step1", description="initial step",
materialInputs=mi)
r <- labkey.provenance.startRecording(baseUrl="https://labkey.org/labkey/",
folderPath = "Provenance", provenanceParams=p)
do <- data.frame(
lsid="urn:lsid:labkey.com:AssayRunTSVData.Folder-251:12c70994-7ce5-1038-82f0-9c1487dbd334")
labkey.provenance.addRecordingStep(baseUrl="https://labkey.org/labkey/", folderPath = "Provenance",
provenanceParams=labkey.provenance.createProvenanceParams(name="additional step",
recordingId=r$recordingId, dataOutputs=do))
# }
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