MAINT.Data (version 2.4.1)

lda-methods: Linear Discriminant Analysis of Interval Data

Description

lda performs linear discriminant analysis of Interval Data based on classic estimates of a mixture of Gaussian models.

Usage

# S4 method for IData
lda(x, grouping, prior="proportions", CVtol=1.0e-5, egvtol=1.0e-10, 
  subset=1:nrow(x), CovCase=1:4, SelCrit=c("BIC","AIC"), silent=FALSE, k2max=1e6, … )
# S4 method for IdtMxtNDE
lda(x, prior="proportions", selmodel=BestModel(x), egvtol=1.0e-10,
  silent=FALSE, k2max=1e6, … )
# S4 method for IdtClMANOVA
lda( x, prior="proportions", selmodel=BestModel(H1res(x)),
  egvtol=1.0e-10, silent=FALSE, k2max=1e6, … )
# S4 method for IdtLocNSNMANOVA
lda( x, prior="proportions", 
  selmodel=BestModel(H1res(x)@NMod), egvtol=1.0e-10, silent=FALSE, k2max=1e6, … )

Arguments

x

An object of class '>IData, '>IdtMxtNDE, '>IdtClMANOVA or '>IdtLocNSNMANOVA with either the original Interval Data, an estimate of a mixture of gaussian models for Interval Data, or the results of an Interval Data MANOVA, from which the discriminant analysis will be based.

grouping

Factor specifying the class for each observation.

prior

The prior probabilities of class membership. If unspecified, the class proportions for the training set are used. If present, the probabilities should be specified in the order of the factor levels.

CVtol

Tolerance level for absolute value of the coefficient of variation of non-constant variables. When a MidPoint or LogRange has an absolute value within-groups coefficient of variation below CVtol, it is considered to be a constant.

egvtol

Tolerance level for the eigenvalues of the product of the inverse within by the between covariance matrices. When a eigenvalue has an absolute value below egvtol, it is considered to be zero.

subset

An index vector specifying the cases to be used in the analysis.

CovCase

Configuration of the variance-covariance matrix: a set of integers between 1 and 4.

SelCrit

The model selection criterion.

silent

A boolean flag indicating wether a warning message should be printed if the method fails.

selmodel

Selected model from a list of candidate models saved in object x.

k2max

Maximal allowed l2-norm condition number for correlation matrices. Correlation matrices with condition number above k2max are considered to be numerically singular, leading to degenerate results.

…

Other named arguments.

References

Brito, P., Duarte Silva, A. P. (2012), Modelling Interval Data with Normal and Skew-Normal Distributions. Journal of Applied Statistics 39(1), 3--20.

Duarte Silva, A.P. and Brito, P. (2015), Discriminant analysis of interval data: An assessment of parametric and distance-based approaches. Journal of Classification 39(3), 516--541.

See Also

qda, snda, Roblda, Robqda, '>IData, '>IdtMxtNDE, '>IdtClMANOVA, '>IdtLocNSNMANOVA

Examples

# NOT RUN {
# Create an Interval-Data object containing the intervals for 899 observations 
# on the temperatures by quarter in 60 Chinese meteorological stations.

ChinaT <- IData(ChinaTemp[1:8],VarNames=c("T1","T2","T3","T4"))

#Linear Discriminant Analysis

ChinaT.lda <- lda(ChinaT,ChinaTemp$GeoReg)
cat("Temperatures of China -- linear discriminant analysis results:\n")
print(ChinaT.lda)
cat("lda Prediction results:\n")
print(predict(ChinaT.lda,ChinaT)$class)

# }
# NOT RUN {
#Estimate error rates by ten-fold cross-validation replicated 20 times  

CVlda <- DACrossVal(ChinaT,ChinaTemp$GeoReg,TrainAlg=lda,CovCase=CovCase(ChinaT.lda))
summary(CVlda[,,"Clerr"])
# }
# NOT RUN {
# }