leaf_par

A list to be constructed into leaf_par.

Logical. Should leaf energy balance be used to calculate leaf temperature (T_leaf)? If TRUE, <code><a rd-options="tealeaves:tleaves" href="/link/tleaf?package=photosynthesis&version=1.0.2&to=tealeaves%3Atleaves" data-mini-rdoc="tealeaves:tleaves::tleaf">tleaf</a></code> calculates T_leaf. If FALSE, user-defined T_leaf is used. Additional parameters and constants are required, see <code><a rd-options="" href="/link/make_parameters?package=photosynthesis&version=1.0.2" data-mini-rdoc="photosynthesis::make_parameters">make_parameters</a></code>.

use_tealeaves

Constructor function for leaf_par class. This function ensures that leaf parameter inputs are properly formatted.

Simulate C3 photosynthesis using the Farquhar, von Caemmerer, Berry (1980) <doi:10.1007/BF00386231> model as described in Buckley and Diaz-Espejo (2015) <doi:10.1111/pce.12459>. It uses units to ensure that parameters are properly specified and transformed before calculations. Temperature response functions get automatically "baked" into all parameters based on leaf temperature following Bernacchi et al. (2002) <doi:10.1104/pp.008250>. The package includes boundary layer, cuticular, stomatal, and mesophyll conductances to CO2, which each can vary on the upper and lower portions of the leaf. Use straightforward functions to simulate photosynthesis over environmental gradients such as Photosynthetic Photon Flux Density (PPFD) and leaf temperature, or over trait gradients such as CO2 conductance or photochemistry.

Chris Muir

photosynthesis

Model C3 Photosynthesis

leaf_par function

Logical. Should leaf energy balance be used to calculate leaf temperature (T_leaf)? If TRUE, <code><a rd-options='tealeaves:tleaves' href='tleaf'>tleaf</a></code> calculates T_leaf. If FALSE, user-defined T_leaf is used. Additional parameters and constants are required, see <code><a rd-options='' href='make_parameters'>make_parameters</a></code>.

leaf_par: S3 class leaf_par

Description

Usage

Arguments