list_offspring

list_parents

For each node in a tree, the functions <code>list_offspring</code> and <code>list_parents</code>
lists all its offspring and parents, respectively.

Implements a parsimonious evolutionary model to analyze and
predict gene-functional annotations in phylogenetic trees as described in Vega
Yon et al. (2021) <doi:10.1371/journal.pcbi.1007948>. Focusing on
computational efficiency, 'aphylo' makes it possible to estimate pooled
phylogenetic models, including thousands (hundreds) of annotations (trees) in
the same run. The package also provides the tools for visualization of
annotated phylogenies, calculation of posterior probabilities (prediction)
and goodness-of-fit assessment featured in Vega Yon et al. (2021).

George Vega Yon

aphylo

Statistical Inference and Prediction of Annotations in
Phylogenetic Trees

National
Cancer Institute (NCI) 

USC Biostatistics 

list_offspring function

<dl><dt>x</dt>
<dd>An object of class <code>phylo</code> or <code>aphylo</code>.</dd></dl>

Arguments

List each nodes' offspring or parent — list_offspring

<dl>

<dt>x</dt>
<dd>An object of class <code>phylo</code> or <code>aphylo</code>.</dd>

</dl>

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list_offspring: List each nodes' offspring or parent

Description

Usage

Value

Arguments

Examples