lmMutations:
Show Mutation Data Contained in a LowMACA object
Description
Method for objects of class LowMACA. It can show the mutation data contained
within the LowMACA object that has been retrieved from getMutations
method.
Usage
lmMutations(object)
Arguments
object
object of class LowMaca
Value
A list containing the following elements:
data a data.frame describing the mutations
on every genes and their effect the amino acids they belong to
freq a data.frame containing the absolute number of mutated patients by gene and selected tumor types
(this is useful to explore the mutational landscape of your genes in the different tumor types)
aligned a matrix where rows represent proteins/pfam, and columns report
the number of mutations on every position of the consensus